A B C D E F G H I J K L M N O P Q R S T U V W X Y

C

C_TO_R - Static variable in class org.sharedx.fftw.Plan

Half-complex-to-real (RIFFT).

C_TO_R_ABS - Static variable in interface org.shared.array.kernel.ArrayKernel

Complex to real conversion by complex magnitudes.

C_TO_R_IM - Static variable in interface org.shared.array.kernel.ArrayKernel

Complex to real conversion by imaginary part.

C_TO_R_RE - Static variable in interface org.shared.array.kernel.ArrayKernel

Complex to real conversion by real part.

CA_PROD - Static variable in interface org.shared.array.kernel.ArrayKernel

Complex accumulator product.

CA_SUM - Static variable in interface org.shared.array.kernel.ArrayKernel

Complex accumulator sum.

Cacheable - Interface in org.shared.fft

Marks an array as being suitable for having its FFT cached.

calculate(List<? extends Handle<? extends I>>) - Method in interface org.shared.parallel.Calculator

Performs an atomic calculation.

Calculator<I,O> - Interface in org.shared.parallel

Defines an atomic calculation as part of a parallel dataflow graph.

cancel(boolean) - Method in class org.shared.net.nio.NioConnection

Does nothing.

canonicalizeSlices(int[][], int[], int[][], int[]) - Static method in class org.shared.array.ArrayBase

Canonicalizes the alternate slicing specification.

canonicalizeSlices(int[], int[], int[][]) - Static method in class org.shared.array.ArrayBase

Canonicalizes the alternate slicing specification.

canonicalizeSlices(int, int[], int[][]) - Static method in class org.shared.array.ArrayBase

Canonicalizes the alternate slicing specification.

caOp(int, double[]) - Method in class org.shared.array.jni.NativeArrayKernel

caOp(int, double[]) - Method in interface org.shared.array.kernel.ArrayKernel

Performs a complex accumulator operation.

caOp(int, double[]) - Static method in class org.shared.array.kernel.ElementOps

A complex accumulator operation in support of JavaArrayKernel.caOp(int, double[]).

caOp(int, double[]) - Method in class org.shared.array.kernel.JavaArrayKernel

caOp(int, double[]) - Method in class org.shared.array.kernel.ModalArrayKernel

capacity() - Method in interface org.shared.util.DynamicArray

Gets the capacity.

capacity() - Method in class org.shared.util.DynamicDoubleArray

capacity() - Method in class org.shared.util.DynamicIntArray

capacity() - Method in class org.shared.util.DynamicLongArray

capacity() - Method in class org.shared.util.DynamicObjectArray

CE_ADD - Static variable in interface org.shared.array.kernel.ArrayKernel

Complex elementwise addition.

CE_DIV - Static variable in interface org.shared.array.kernel.ArrayKernel

Complex elementwise division.

CE_MUL - Static variable in interface org.shared.array.kernel.ArrayKernel

Complex elementwise multiplication.

CE_SUB - Static variable in interface org.shared.array.kernel.ArrayKernel

Complex elementwise subtraction.

centers - Variable in class org.shared.stat.ml.GmComponents

The centers.

ChainFilterFactory<I,O,H extends ConnectionHandler<?>> - Class in org.shared.net.filter

An implementation of FilterFactory that enables chaining of multiple underlying FilterFactorys.

ChainFilterFactory() - Constructor for class org.shared.net.filter.ChainFilterFactory

Default constructor.

ChainFilterFactory(FilterFactory<? extends Filter<?, ?>, ?, ?, ? super H>[], FilterFactory<? extends Filter<I, ?>, I, ?, ? super H>) - Constructor for class org.shared.net.filter.ChainFilterFactory

Internal constructor.

checkCurrentThread() - Method in class org.shared.event.EventProcessor

Checks that Thread.currentThread() is indeed this thread.

checkDimensions(int, int[], int[]) - Static method in class org.shared.array.kernel.MappingOps

Checks an array's dimensions and strides.

checkEquals(int, int) - Static method in class org.shared.util.Control

Checks if two ints are equal.

checkEquals(T, T) - Static method in class org.shared.util.Control

Checks if two objects are equal.

checkEquals(int, int, String) - Static method in class org.shared.util.Control

Checks if two ints are equal.

checkEquals(T, T, String) - Static method in class org.shared.util.Control

Checks if two objects are equal.

checkInvalidParity() - Method in class org.shared.array.AbstractArray

Checks that this array's parity is AbstractArray.INVALID_PARITY.

checkMatrixOrder() - Method in class org.shared.array.AbstractArray

Checks that this array has storage order ArrayBase.DEFAULT_ORDER.

checkShape(T) - Method in class org.shared.array.AbstractArray

Checks that two AbstractArrays have the same size and underlying Array.IndexingOrder.

checkShape(IntegerArray) - Method in class org.shared.array.IntegerArray

Checks that two IntegerArrays have the same size and underlying Array.IndexingOrder.

checkTrue(boolean) - Static method in class org.shared.util.Control

Checks if a condition is true.

checkTrue(boolean, String) - Static method in class org.shared.util.Control

Checks if a condition is true.

checkUninitialized() - Method in class org.shared.net.filter.ssl.SslFilterFactory

Checks that this factory is uninitialized.

classLock - Static variable in class org.shared.net.nio.NioManager

A global lock for the entire class.

classpathResolver - Static variable in class org.shared.util.XmlBase

An implementation of EntityResolver that finds external entities on the class path of the current thread's context class loader.

clear() - Method in interface org.shared.util.DynamicArray

Clears this array.

clear() - Method in class org.shared.util.DynamicDoubleArray

clear() - Method in class org.shared.util.DynamicIntArray

clear() - Method in class org.shared.util.DynamicLongArray

clear() - Method in class org.shared.util.DynamicObjectArray

Cli - Class in org.shared.cli

An interpreter for CliOptions annotations, from which Apache Commons CLI Options objects are derived.

ClientServerTest - Class in org.shared.test.net

A simple client and server demo.

ClientServerTest() - Constructor for class org.shared.test.net.ClientServerTest

Default constructor.

ClientServerTest.Utf8Handler - Class in org.shared.test.net

An internal Connection class for demo purposes.

ClientServerTest.Utf8Handler(String) - Constructor for class org.shared.test.net.ClientServerTest.Utf8Handler

Default constructor.

clientSslFilterFactory - Static variable in class org.shared.test.net.AsynchronousHandlerTest

The client SslFilterFactory.

clientSslFilterFactory - Static variable in class org.shared.test.net.SynchronousHandlerTest

The client SslFilterFactory.

CliOptions - Annotation Type in org.shared.cli

An annotation class for specifying Apache Commons CLI Options objects.

CliOptions.CliOption - Annotation Type in org.shared.cli

An annotation for a single Option.

clone() - Method in interface org.shared.array.Array

Copies this array.

clone() - Method in class org.shared.array.ProtoArray

clone() - Method in class org.shared.array.sparse.ProtoSparseArray

clone() - Method in interface org.shared.util.DynamicArray

Clones this array.

clone() - Method in class org.shared.util.DynamicDoubleArray

clone() - Method in class org.shared.util.DynamicIntArray

clone() - Method in class org.shared.util.DynamicLongArray

clone() - Method in class org.shared.util.DynamicObjectArray

close() - Method in class org.shared.event.EventProcessor

Stops this thread.

close() - Method in interface org.shared.event.Source

Overrides Closeable.close() so that it doesn't throw an exception.

close(Closeable) - Static method in class org.shared.metaclass.MetaclassBase

A Closeable.close() convenience wrapper.

close() - Method in interface org.shared.net.Connection

Closes this connection.

close() - Method in interface org.shared.net.ConnectionManager

Shuts down this manager and reclaims its resources.

close() - Method in class org.shared.net.handler.AbstractFilteredHandler

close() - Method in class org.shared.net.handler.SynchronousHandler.ManagedInputStream

Closes this stream.

close() - Method in class org.shared.net.handler.SynchronousHandler.ManagedOutputStream

Closes this stream.

close() - Method in class org.shared.net.nio.NioConnection

close() - Method in class org.shared.net.nio.NioManager

close() - Method in class org.shared.net.nio.NioManagerThread

Stops this thread and waits for it to terminate.

close(Closeable) - Static method in class org.shared.util.IoBase

A Closeable.close() convenience wrapper.

closingHandler - Variable in class org.shared.net.nio.NioConnection

An internal handler for connection closure.

cluster(int, RealArray) - Static method in class org.shared.stat.ml.KMeans

Groups a set of points into the given number of clusters.

Codecs - Class in org.shared.codec

A collection of convenience wrappers for the static methods found in Apache Commons Codec's Base64 and Hex classes.

CodecTest - Class in org.shared.test.util

A class of unit tests for I/O codecs.

CodecTest() - Constructor for class org.shared.test.util.CodecTest

Default constructor.

colormaps - Static variable in class org.shared.image.IntensityImages

A mapping of color names to interpolating colormaps.

Combinatorics - Class in org.shared.stat.util

A static utility class for combinatorics.

CombinatoricsTest - Class in org.shared.test.stat

A class of unit tests for Combinatorics.

CombinatoricsTest() - Constructor for class org.shared.test.stat.CombinatoricsTest

Default constructor.

compare(double[], double[]) - Static method in class org.shared.util.Arrays

Compares two arrays of doubles on the basis of lexicographic order.

compare(int[], int[]) - Static method in class org.shared.util.Arrays

Compares two arrays of ints on the basis of lexicographic order.

compare(T[], T[]) - Static method in class org.shared.util.Arrays

Compares two arrays of objects on the basis of lexicographic order.

compare(T[], T[], Comparator<? super T>) - Static method in class org.shared.util.Arrays

Compares two arrays of objects on the basis of lexicographic order.

compareTo(AbstractComplexArray.Complex) - Method in class org.shared.array.AbstractComplexArray.Complex

Does a comparison on the basis of magnitude.

compareTo(PermutationEntry<C>) - Method in class org.shared.array.kernel.PermutationEntry

Compares values.

compareTo(Engine<T>.EngineNode<?, ?>) - Method in class org.shared.parallel.Engine.EngineNode

Compares traversal orders to determine priority of execution.

compareTo(LimitedMemoryPolicy<V, E>.PolicyNode) - Method in class org.shared.parallel.LimitedMemoryPolicy.PolicyNode

Compares maximum distance from the source.

ComplexArray - Class in org.shared.array

A multidimensional complex array class.

ComplexArray(int...) - Constructor for class org.shared.array.ComplexArray

Default constructor.

ComplexArray(int, int[]) - Constructor for class org.shared.array.ComplexArray

Internal constructor with a distinctive signature.

ComplexArray(double[], int...) - Constructor for class org.shared.array.ComplexArray

Alternate constructor.

ComplexArray(ComplexArray) - Constructor for class org.shared.array.ComplexArray

Alternate constructor.

ComplexArray(int, double[], int[]) - Constructor for class org.shared.array.ComplexArray

Internal constructor with a distinctive signature.

ComplexArray(int, int[], int[]) - Constructor for class org.shared.array.ComplexArray

Internal constructor for package use only.

complexArrayCountLocal - Static variable in class org.shared.array.kernel.MatlabIoKernel

A ComplexArray counter local to the current thread.

Compression - Class in org.shared.codec

A collection of convenience wrappers for the static methods found in Deflater and Inflater.

computeLogWeightedDensities(GmComponents, RealArray) - Method in class org.shared.stat.ml.AbstractGmModel

Computes the log of the weighted densities.

computeLogWeightedDensities(GmComponents, RealArray) - Method in class org.shared.stat.ml.GmModel

computePosterior(GmComponents, RealArray) - Method in class org.shared.stat.ml.AbstractGmModel

Computes the posterior distribution and updates the mean likelihood of the points.

concat(int, T...) - Method in interface org.shared.array.Array

Concatenates this array with the given arrays along the given dimension.

concat(int, T...) - Method in class org.shared.array.ProtoArray

concat(int, T...) - Method in class org.shared.array.sparse.ProtoSparseArray

configureLog4J(String) - Static method in class org.shared.log.Logging

Configures Log4J from an XML file found on the class path of Thread.getContextClassLoader().

Connection - Interface in org.shared.net

Defines a managed connection.

Connection.OperationType - Enum in org.shared.net

An enumeration of the managed operations manipulable by the user.

ConnectionHandler<C extends Connection> - Interface in org.shared.net

Defines a handler for Connection callbacks.

ConnectionHandler.ClosingType - Enum in org.shared.net

An enumeration of the ways in which a connection may be closed.

ConnectionManager<C extends Connection> - Interface in org.shared.net

Defines a transport layer for managing Connections.

ConnectionManager.InitializationType - Enum in org.shared.net

An enumeration of the ways in which a connection may be initialized.

Constants - Class in org.shared

Contains SST constant values.

Constants - Class in org.shared.net

Contains constant values.

containsPrefixes(String[], int, boolean) - Method in class org.shared.metaclass.RegistryClassLoader.PrefixNode

Gets whether the given series of prefixes is contained in the policy hierarchy.

Control - Class in org.shared.util

A static utility class for control flow.

convert(int, Object, boolean, Object, boolean) - Method in class org.shared.array.jni.NativeArrayKernel

convert(int, Object, boolean, Object, boolean) - Method in interface org.shared.array.kernel.ArrayKernel

Performs a conversion operation.

convert(int, Object, boolean, Object, boolean) - Static method in class org.shared.array.kernel.ElementOps

A type conversion operation in support of JavaArrayKernel.convert(int, Object, boolean, Object, boolean).

convert(int, Object, boolean, Object, boolean) - Method in class org.shared.array.kernel.JavaArrayKernel

convert(int, Object, boolean, Object, boolean) - Method in class org.shared.array.kernel.ModalArrayKernel

ConvolutionCache - Class in org.shared.fft

A specialization of FftCache for RealArrays and ComplexArrays.

ConvolutionCacheTest - Class in org.shared.test.fft

A class of unit tests for ConvolutionCache.

ConvolutionCacheTest() - Constructor for class org.shared.test.fft.ConvolutionCacheTest

Default constructor.

convolve(ComplexArray, ComplexArray) - Method in class org.shared.fft.ConvolutionCache

Performs convolution in the complex domain.

convolve(ComplexArray, RealArray) - Method in class org.shared.fft.ConvolutionCache

Performs convolution in the real domain.

copy(File, File) - Static method in class org.shared.util.IoBase

Copies a file or directory.

count(int[], int) - Static method in class org.shared.util.Arithmetic

Counts the number of times the given value appears.

covariances - Variable in class org.shared.stat.ml.GmComponents

The (diagonal) covariances.

create(int, int[], int) - Method in class org.sharedx.fftw.Plan

Creates a pointer to the native peer.

createCacheable(A, int[]) - Method in class org.shared.fft.ConvolutionCache

createCacheable(A, int[]) - Method in class org.shared.fft.FftCache

Creates an instance of the complex array type.

createClientSslFilterFactory() - Static method in class org.shared.test.net.AllNetTests

Creates a client-side SslFilterFactory.

createCommandLine(Class<?>, String[]) - Static method in class org.shared.cli.Cli

Creates a CommandLine.

createData(long, int) - Static method in class org.shared.test.net.AbstractTestVerifier

Creates a block of data for transport.

createDataEvent(byte[]) - Method in class org.shared.test.net.AbstractTestVerifier.AbstractSenderVerifier

Creates a data event.

createDataEvent(byte[]) - Method in class org.shared.test.net.TestXmlEvent.SenderXmlVerifier

createDataMap(JarInputStream) - Static method in class org.shared.metaclass.JarRegistry

Creates a mapping of pathnames to data from a JarInputStream.

createDataMap(JarFile) - Static method in class org.shared.metaclass.JarRegistry

Creates a mapping of pathnames to data from a JarFile.

createDefaultTitles(int) - Static method in class org.shared.stat.plot.PlotBase

Creates a default array of titles.

createDemoDir() - Static method in class org.shared.test.Demo

Creates the demo directory.

createDimensionOffsets(int[]) - Static method in class org.shared.array.sparse.ProtoSparseArray

Creates dimension offsets from the given dimensions.

createEos() - Method in class org.shared.net.handler.XmlHandler

Creates an end-of-stream XmlEvent.

createEos() - Method in class org.shared.test.net.TestXmlHandler

createError() - Method in class org.shared.net.handler.XmlHandler

Creates an error XmlEvent.

createError() - Method in class org.shared.test.net.TestXmlHandler

createFactors(int) - Static method in class org.shared.fft.FftOps

Creates a prime factorization and stride modifiers array.

createGradientKernels(int) - Static method in class org.shared.image.filter.Filters

Creates a pair of x- and y-axis aligned DooG kernels for gradient calculations.

createHelp(Class<?>) - Static method in class org.shared.cli.Cli

Creates a help string.

createIlut(int) - Static method in class org.shared.image.kernel.ImageOps

Creates an index lookup table for speedy index calculations.

createImage(RealArray, String, double, double) - Static method in class org.shared.image.IntensityImages

Converts a RealArray to a BufferedImage.

createIntegralHistogram(double[], int[], int[], int[], double[], int[], int[]) - Method in class org.shared.image.jni.NativeImageKernel

createIntegralHistogram(double[], int[], int[], int[], double[], int[], int[]) - Method in interface org.shared.image.kernel.ImageKernel

Creates an integral histogram.

createIntegralHistogram(double[], int[], int[], int[], double[], int[], int[]) - Static method in class org.shared.image.kernel.ImageOps

Supports JavaImageKernel.createIntegralHistogram(double[], int[], int[], int[], double[], int[], int[]).

createIntegralHistogram(double[], int[], int[], int[], double[], int[], int[]) - Method in class org.shared.image.kernel.JavaImageKernel

createIntegralHistogram(double[], int[], int[], int[], double[], int[], int[]) - Method in class org.shared.image.kernel.ModalImageKernel

createIntegralImage(double[], int[], int[], double[], int[], int[]) - Method in class org.shared.image.jni.NativeImageKernel

createIntegralImage(double[], int[], int[], double[], int[], int[]) - Method in interface org.shared.image.kernel.ImageKernel

Creates an integral image.

createIntegralImage(double[], int[], int[], double[], int[], int[]) - Static method in class org.shared.image.kernel.ImageOps

Supports JavaImageKernel.createIntegralImage(double[], int[], int[], double[], int[], int[]).

createIntegralImage(double[], int[], int[], double[], int[], int[]) - Method in class org.shared.image.kernel.JavaImageKernel

createIntegralImage(double[], int[], int[], double[], int[], int[]) - Method in class org.shared.image.kernel.ModalImageKernel

createInterpolatingColormap(int...) - Static method in class org.shared.image.IntensityImages

Creates a colormap by interpolating between start, end, and intermediate colors.

createLineStyleDefinition(DataStyle) - Static method in class org.shared.stat.plot.GnuplotContext

Creates a Gnuplot line style definition from the given DataStyle.

createMatrix(BufferedImage) - Static method in class org.shared.image.IntensityImages

Converts a BufferedImage to a RealArray.

createMatrix(File) - Static method in class org.shared.image.IntensityImages

Creates a RealArray from an image file.

createMatrix(byte[]) - Static method in class org.shared.image.IntensityImages

Creates a RealArray from a byte array.

createMessage(int, int) - Static method in class org.shared.test.net.SynchronousHandlerTest

Creates a message.

createOpEvent(int, boolean) - Method in class org.shared.net.nio.NioConnection

Creates an operation interest change NioEvent that originates from this connection.

createOptions(Class<?>) - Static method in class org.shared.cli.Cli

Creates a set of Options.

createPointSupport(int) - Static method in class org.shared.image.filter.Filters

Creates a point support matrix.

createQueue() - Static method in class org.shared.net.filter.Filters

Creates a new coalescing Queue whose Queue.add(Object) method incorporates an element only if the tail element is not the same (by reference equality).

createReceiver(int, InetSocketAddress) - Method in class org.shared.test.net.SynchronousHandlerTest

Creates a receiving verifier.

createReverseSlices(int[], int[]) - Static method in class org.shared.array.ArrayBase

Creates a slicing specification for Array.reverse(int...).

createRotationMatrix(double) - Static method in class org.shared.image.filter.Filters

Creates the 2×2 rotation matrix
-cos(θ) -sin(θ) -sin(θ) cos(θ).

createSender(int, InetSocketAddress) - Method in class org.shared.test.net.SynchronousHandlerTest

Creates a sending verifier.

createSequenceEvent(long, int) - Method in class org.shared.test.net.AbstractTestVerifier.AbstractReceiverVerifier

Creates a sequence event.

createSequenceEvent(long, int) - Method in class org.shared.test.net.TestXmlEvent.ReceiverXmlVerifier

createServerSslFilterFactory() - Static method in class org.shared.test.net.AllNetTests

Creates a server-side SslFilterFactory.

createService(Class<? super A>) - Static method in class org.shared.util.Services

Creates an implementing class instance from the given specification superclass.

createTwiddles(int, int) - Static method in class org.shared.fft.FftOps

Creates an array of twiddle factors.

CU_ADD - Static variable in interface org.shared.array.kernel.ArrayKernel

Complex unary addition.

CU_CONJ - Static variable in interface org.shared.array.kernel.ArrayKernel

Complex unary conjugation.

CU_COS - Static variable in interface org.shared.array.kernel.ArrayKernel

Complex unary cosine.

CU_EXP - Static variable in interface org.shared.array.kernel.ArrayKernel

Complex unary exponentiation.

CU_FILL - Static variable in interface org.shared.array.kernel.ArrayKernel

Complex unary fill.

CU_MUL - Static variable in interface org.shared.array.kernel.ArrayKernel

Complex unary multiplication.

CU_RND - Static variable in interface org.shared.array.kernel.ArrayKernel

Complex unary randomization.

CU_SHUFFLE - Static variable in interface org.shared.array.kernel.ArrayKernel

Complex unary shuffle.

CU_SIN - Static variable in interface org.shared.array.kernel.ArrayKernel

Complex unary sine.

cuOp(int, double, double, double[]) - Method in class org.shared.array.jni.NativeArrayKernel

cuOp(int, double, double, double[]) - Method in interface org.shared.array.kernel.ArrayKernel

Applies a complex unary operation.

cuOp(int, double, double, double[]) - Static method in class org.shared.array.kernel.ElementOps

A complex unary elementwise operation in support of JavaArrayKernel.cuOp(int, double, double, double[]).

cuOp(int, double, double, double[]) - Method in class org.shared.array.kernel.JavaArrayKernel

cuOp(int, double, double, double[]) - Method in class org.shared.array.kernel.ModalArrayKernel

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